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Microarray Database Specifications


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new tables = *

Core Tables
Access Group : access_group
Affymetrix : result_affy_set | result_affy_cell | result_affy_computed | affy_feature
Category : category | subCategory
Control: *doping_controls | *expt_doping
Experiment : experiment | exptNorm | expt_access | expt_desc | expt_deletion
Experiment Type : expttype | expt_expttype
Feature : feature | feature_location | feature_sector | feature_platesample
Normalization : normalization
Plate : project | plateLocation | plate | plateSample
Print : printer | print_config | print
Sector : sector
Result : result | result_vu | result_genepix_set | result_genepix_computed
Result Agilent : result_agilent_set | result_agilent_raw | result_agilent_computed | result_agilent_flag | result_cv
User : dbUser | user_session | group_user

Biosequence Tables
Biosequence : *biosequence | *bioseq_attr | *bioseq_attr_type | *bioseq_mapping | *bioseq_mapping_attr | *reporter | *reporter_bioseq_map | *default_annotation | *database_alias | *display | *cross_species_mapping
Enumeration : *control_enum | *database_enum | *bioseq_type | *mapping_enum | *taxonomy_enum | *sequence_enum | *polymer_enum

Experiment Annotation Tables
Clinical : patient | clinical_sample | clinical_eav | expt_patient | expt_clinical
Condition : condition | condition_value | probe_value
Deposit : deposit | deposit_access | deposit_exptset
Experiment Set : exptset_type | exptset | exptset_expt
Factor : experimental_factor | factor_value | measurement_unit
Probe : probe | seed_source | probe_seed | expt_probe
Protocol : protocol | expt_protocol
Publication : publication | abstract | pub_url | pub_exptset
Tag Set : tagset | tag | expt_tag_eav | tag_organism | expttype_tagset

Sequence Annotation Tables
BLAST : xhyb_blast
Chromosome: chromosome
Golden Path : golden_path | cytoband

Miscellanous Tables
Meta Data : meta
Ontologies : go_assoc | ontology_ref | ontology | ontology_annotation | ontology_annotation_type | ontology_dbref | ontology_node | ontology_term_tree
Queue : queue | queue_access | jobqueue
URL : url | template_url | valid_url
Other : clone_physical_loc | dbext | dbsym | probe_value

External Dataset Tables
dbEST : dbESTlib | dbEST
LocusLink : locusLink | LL_Mult | LL_Set
RhDB : RhDB | rhLink
SwissProt : swissProt | spLink | spDesc | spFeature
UniGene : ugLIB | ugCluster | ugSTS | ugProtsim | ugTxMap | ugSeq | ugSynonym
Uniprot : uniprotid_clusterid | uniprot_locuslink